REF or MOB parameter restricts B-value checking to
the specified structure.
CENTRE.
WRITE or MWRITE commands), with the centre of
geometry located at the origin instead of in the same coordinate frame
as the reference set.
ALIGN command.
MOBILE and
REFERENCE commands.
ITERATE command may be
followed by an optional distance cutoff (default: 3.0Å) or by the
keyword `OFF' to switch off iterative zone calculation.
LIMIT OFF restores the default behaviour.
MOBILE and REFERENCE commands.
RESIDUE |lesswill cause the results to be displayed on the screen using the
less pager program.
RZONE and RATOMS.
RZONE * or
RZONE CLEAR resets the zones for RMSD calculation to be
the same as that specified with the ZONE command.
WRITE |lesswill cause the coordinates to be displayed on the screen using the
less pager program.
If the REFERENCE keyword is given (only the letters `REF' are
required), then the reference set will be written. This is used in
conjunction with the CENTRE command.
ZONE * or ZONE CLEAR
removes all zone specifications.